> ## Documentation Index
> Fetch the complete documentation index at: https://docs.kalarislabs.com/llms.txt
> Use this file to discover all available pages before exploring further.

# omero-integration — AI agent skill for lab automation

> Securely inspect and automate microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering,…

# `omero-integration`

> Securely inspect and automate microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.

**Category:** [lab-automation](/research-agent-skills/skills#lab-automation) · **License:** MIT · **Version:** 1.4

## Install

```bash theme={null}
npx research-agent-skills install omero-integration
npx skills add KalarisLabs/research-agent-skills --skill omero-integration
```

## When to use it

Securely inspect and automate microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.

## Full playbook

Read [SKILL.md](https://github.com/KalarisLabs/research-agent-skills/blob/main/skills/omero-integration/SKILL.md) for the complete workflow, references and any scripts. The agent installer copies the full skill folder.


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