> ## Documentation Index
> Fetch the complete documentation index at: https://kalarislabs.com/llms.txt
> Use this file to discover all available pages before exploring further.

# arboreto — AI agent skill for life sciences

> Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3).

# `arboreto`

> Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

**Category:** [life-sciences](/skills#life-sciences) · **License:** BSD-3-Clause license · **Version:** 1.1

## Install

```bash theme={null}
npx research-agent-skills install arboreto
npx skills add KalarisLabs/research-agent-skills --skill arboreto
```

## When to use it

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

## Full playbook

Read [SKILL.md](https://github.com/KalarisLabs/research-agent-skills/blob/main/skills/arboreto/SKILL.md) for the complete workflow, references and any scripts. The agent installer copies the full skill folder.