Skip to main content

​
matchms

Process, clean, compare, and search tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral similarity, library matching, score matrices, and molecular-similarity networks. Use pyopenms instead for LC-MS feature detection or proteomics pipelines.
Category: life-sciences · License: Apache-2.0 · Version: 2.1

​
Install

​
When to use it

Process, clean, compare, and search tandem mass spectra with matchms. Use for MS/MS file I/O, metadata harmonization, peak filtering, spectral similarity, library matching, score matrices, and molecular-similarity networks. Use pyopenms instead for LC-MS feature detection or proteomics pipelines.

​
Full playbook

Read SKILL.md for the complete workflow, references and any scripts. The agent installer copies the full skill folder.