lamindb
Category: data-science-and-ml · License: Apache-2.0 license · Version: 1.2
Tags: data lineage, biological data, data management, ontologies, MLOps
When to use it
Use when working with LaminDB, the open-source lineage-native lakehouse for biological datasets and models. Covers setup, artifact registration, query/search, lineage tracking, validation, ontology-backed annotation with Bionty, collections, branches, storage, and workflow integrations.Example requests
Ask your agent in plain language, for example:- “How do I register a parquet file as an artifact in LaminDB and see which notebook produced it?”
- “I have a 10x PBMC dataset in pbmc_filtered.h5ad (human, 18k cells) and I’m getting ‘N terms are not validated’ for obs[‘cell_type’] and obs[‘tissue’] when I run curator.validate(). I want to map them to Cell Ontology and Uberon before saving. What should I do?”
- “Our lab has hundreds of flow cytometry and RNA-seq files scattered across S3 buckets. I want one place where I can filter them by tissue, donor and experiment date, and trace each processed file back to the script and inputs that made it. What setup would you suggest?”
Install
/plugin marketplace add KalarisLabs/research-agent-skills and install the whole data-science-and-ml category with /plugin install data-science-and-ml@research-agent-skills.