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neuropixels-analysis

Analyze Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and unit curation (threshold-based, model-based UnitRefine, and AI-assisted visual review). Use when working with Neuropixels 1.0/2.0 recordings, spike sorting, or extracellular electrophysiology analysis.

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Install

npx research-agent-skills install neuropixels-analysis
npx skills add KalarisLabs/research-agent-skills --skill neuropixels-analysis

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When to use it

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Full playbook